From b88253492f364da79024745e2be2ede68b7164b7 Mon Sep 17 00:00:00 2001
From: Britney Fransen <brfransen@gmail.com>
Date: Thu, 4 Dec 2014 15:01:56 +0000
Subject: r: initial inclusion. dep of graphviz

---
 abs/extra/r/PKGBUILD  |  90 ++++++++++++++++++++++++++++++++++++++++++++++++++
 abs/extra/r/R.conf    |   2 ++
 abs/extra/r/r.desktop |  11 ++++++
 abs/extra/r/r.install |  16 +++++++++
 abs/extra/r/r.png     | Bin 0 -> 4771 bytes
 5 files changed, 119 insertions(+)
 create mode 100644 abs/extra/r/PKGBUILD
 create mode 100644 abs/extra/r/R.conf
 create mode 100644 abs/extra/r/r.desktop
 create mode 100644 abs/extra/r/r.install
 create mode 100644 abs/extra/r/r.png

diff --git a/abs/extra/r/PKGBUILD b/abs/extra/r/PKGBUILD
new file mode 100644
index 0000000..7b4f031
--- /dev/null
+++ b/abs/extra/r/PKGBUILD
@@ -0,0 +1,90 @@
+# $Id$
+# Maintainer: Ronald van Haren <ronald.archlinux.org>
+# Contributor: Damir Perisa <damir.perisa@bluewin.ch>
+# Contributor: K. Piche <kpiche@rogers.com>
+
+pkgname=r
+pkgver=3.1.2
+pkgrel=1
+pkgdesc="Language and environment for statistical computing and graphics"
+arch=('i686' 'x86_64')
+license=('GPL')
+url=('http://www.r-project.org/')
+depends=('blas' 'lapack' 'bzip2'  'libpng' 'libjpeg' 'libtiff'
+         'ncurses' 'pcre' 'readline' 'zlib' 'perl' 'gcc-libs'
+         'libxt' 'libxmu' 'pango' 'xz' 'desktop-file-utils' 'zip' 'unzip')
+makedepends=('jdk7-openjdk' 'gcc-fortran' 'tk')
+optdepends=('tk: tcl/tk interface' 'texlive-bin: latex sty files')
+backup=('etc/R/Makeconf' 'etc/R/Renviron' 'etc/R/ldpaths' 'etc/R/repositories' 'etc/R/javaconf')
+options=('!makeflags' '!emptydirs')
+install=r.install
+source=("http://cran.r-project.org/src/base/R-${pkgver%%.*}/R-${pkgver}.tar.gz"
+	'r.desktop'
+	'r.png'
+	'R.conf')
+sha1sums=('93809368e5735a630611633ac1fa99010020c5d6'                                                   
+          'd7fa521345b230a4187d60d07d06ce4b6d573e3f'                                                   
+          'a69a07ec363440efc18ce0a7f2af103375dea978'                                                   
+          '43668da6cfd1b4455a99f23e79e2059294dddac9')  
+
+prepare() {
+   cd R-${pkgver}
+   # set texmf dir correctly in makefile
+   sed -i 's|$(rsharedir)/texmf|${datarootdir}/texmf|' share/Makefile.in
+   # fix for texinfo 5.X
+   sed -i 's|test ${makeinfo_version_min} -lt 7|test ${makeinfo_version_min} -lt 0|' configure
+}
+
+build() {
+   cd R-${pkgver}
+   ./configure  --prefix=/usr \
+		--libdir=/usr/lib \
+		--sysconfdir=/etc/R \
+		--datarootdir=/usr/share \
+		  rsharedir=/usr/share/R/ \
+		  rincludedir=/usr/include/R/ \
+		  rdocdir=/usr/share/doc/R/ \
+                --with-x \
+		--enable-R-shlib \
+                --with-lapack \
+		--with-blas \
+                F77=gfortran \
+		LIBnn=lib
+   make
+
+# make libRmath.so
+   cd src/nmath/standalone
+   make shared
+}
+
+package() {
+   cd R-${pkgver}
+   make DESTDIR="${pkgdir}" install
+
+# install libRmath.so
+   cd src/nmath/standalone
+   make DESTDIR="${pkgdir}" install
+
+   #  Fixup R wrapper scripts.
+   sed -i "s|${pkgdir} ||" "${pkgdir}/usr/bin/R"
+   rm "${pkgdir}/usr/lib/R/bin/R"
+   cd "${pkgdir}/usr/lib/R/bin"
+   ln -s ../../../bin/R
+
+  # install some freedesktop.org compatibility
+  install -Dm644 "${srcdir}/r.desktop" \
+	"${pkgdir}/usr/share/applications/r.desktop"
+  install -Dm644 "${srcdir}/r.png" \
+	"${pkgdir}/usr/share/pixmaps/r.png"
+
+  # move the config directory to /etc and create symlinks
+  install -d "${pkgdir}/etc/R"
+  cd "${pkgdir}/usr/lib/R/etc"
+  for i in *; do
+    mv -f ${i} "${pkgdir}/etc/R"
+    ln -s /etc/R/${i} ${i}
+  done
+
+  # Install ld.so.conf.d file to ensure other applications access the shared lib
+  install -Dm644 "${srcdir}/R.conf" "${pkgdir}/etc/ld.so.conf.d/R.conf"
+}
diff --git a/abs/extra/r/R.conf b/abs/extra/r/R.conf
new file mode 100644
index 0000000..e360859
--- /dev/null
+++ b/abs/extra/r/R.conf
@@ -0,0 +1,2 @@
+/usr/lib/R/lib
+
diff --git a/abs/extra/r/r.desktop b/abs/extra/r/r.desktop
new file mode 100644
index 0000000..7732c9b
--- /dev/null
+++ b/abs/extra/r/r.desktop
@@ -0,0 +1,11 @@
+[Desktop Entry]
+Name=R
+GenericName=environment for statistical computing
+Comment=language and environment for statistical computing and graphics
+Exec=R
+Icon=/usr/share/pixmaps/r.png
+DocPath=/usr/lib/R/doc/html/index.html
+StartupNotify=true
+Terminal=true
+Type=Application
+Categories=Science;
diff --git a/abs/extra/r/r.install b/abs/extra/r/r.install
new file mode 100644
index 0000000..522ce52
--- /dev/null
+++ b/abs/extra/r/r.install
@@ -0,0 +1,16 @@
+post_install() {
+  update-desktop-database -q
+  if [[ -x /usr/bin/mktexlsr ]]; then
+     echo ">>> updating the filename database for texlive..."
+     mktexlsr --quiet usr/share/texmf
+  fi
+}
+
+post_upgrade() {
+  post_install
+}
+
+post_remove() {
+  post_install
+}
+
diff --git a/abs/extra/r/r.png b/abs/extra/r/r.png
new file mode 100644
index 0000000..1303ccd
Binary files /dev/null and b/abs/extra/r/r.png differ
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